SNP Profiles of PA 70 [PER] View Data

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_Input profile	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
1._PA_70_[PER]	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
2._PA_70_[PER]	AA	AC	TT	AC	_	_	_	_	CC	CC	GG	_	CC	_
3._PA_70_[PER]	AA	AC	TT	AC	_	_	_	_	CC	CC	GG	_	CC	_
4._RUQ_33	AA	AC	TT	AC	_	_	_	_	CC	CC	GG	_	CC	_
5._RUQ_33	_	_	_	AC	_	_	CC	_	_	_	_	_	_	_
6._GC-04-053-3-17	AA	AC	TT	AC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
7._RUQ_33	_	_	TT	AC	_	_	CC	_	CC	_	_	TT	CC	_
8._PA70[PER]	_	_	_	AC	_	_	_	_	CC	_	_	_	CC	_
9._GC-04-53-3-17	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
10._RUQ_33	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
11._MITC-000025	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
12._MITC-000026	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	CC	_	CC	GG	AA	_	GG	GG	_	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
1._PA_70_[PER]	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
2._PA_70_[PER]	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
3._PA_70_[PER]	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
4._RUQ_33	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
5._RUQ_33	_	_	_	AG	TT	_	_	_	_	_	_	_	_	_
6._GC-04-053-3-17	AA	CC	_	AG	CC	CC	CG	TT	AA	TT	GG	AT	AA	CC
7._RUQ_33	_	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC
8._PA70[PER]	_	_	GG	_	_	GG	_	TT	_	_	GG	_	AA	CC
9._GC-04-53-3-17	TT	CC	GG	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG
10._RUQ_33	TT	CC	GG	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG
11._MITC-000025	TT	CC	GG	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG
12._MITC-000026	TT	CC	GG	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	TT	CC	GG	GG	CC	_	CC	AG	AG	AA	GG	AT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA
1._PA_70_[PER]	CG	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_
2._PA_70_[PER]	GG	AA	_	_	_	CG	_	AG	GG	_	_	AG	_	_
3._PA_70_[PER]	GG	AA	_	_	_	CG	_	AG	GG	_	_	AG	_	_
4._RUQ_33	GG	AA	_	_	_	CG	_	AG	GG	_	_	AG	_	_
5._RUQ_33	GG	_	_	_	_	CG	_	AG	_	_	_	_	CT	_
6._GC-04-053-3-17	GG	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	AG	CT	AG
7._RUQ_33	GG	_	_	_	GG	CG	CC	AG	GG	_	_	AG	CT	_
8._PA70[PER]	CC	_	_	_	GG	CG	_	_	_	_	TT	_	CT	_
9._GC-04-53-3-17	CC	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG
10._RUQ_33	CC	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG
11._MITC-000025	CC	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG
12._MITC-000026	CC	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG
13._PA_70_[PER]_Fld#_185_Plt#_1	CC	AA	AA	AC	GG	GG	CC	AG	CC	CC	AC	AG	GG	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC
1._PA_70_[PER]	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
2._PA_70_[PER]	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
3._PA_70_[PER]	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
4._RUQ_33	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC
5._RUQ_33	_	_	_	_	_	GG	_	_	_	_	_	_	_	_
6._GC-04-053-3-17	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC
7._RUQ_33	_	GG	TT	_	_	GG	_	_	_	_	_	_	CT	CC
8._PA70[PER]	_	_	TT	_	AA	_	_	_	_	_	_	_	_	CC
9._GC-04-53-3-17	GG	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG
10._RUQ_33	GG	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG
11._MITC-000025	GG	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG
12._MITC-000026	GG	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	GG	CC	_	AG	_	GG	AA	GG	_	GG	AA	CC	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG
1._PA_70_[PER]	TT	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_
2._PA_70_[PER]	CC	_	_	_	_	CT	AA	GG	_	AA	AG	GG	GG	_
3._PA_70_[PER]	CC	_	_	CC	_	CT	AA	GG	_	AA	AG	GG	GG	_
4._RUQ_33	CC	_	_	CC	_	CT	AA	GG	_	AA	AG	GG	GG	_
5._RUQ_33	_	_	GG	_	_	_	_	_	_	AA	AG	_	GG	GG
6._GC-04-053-3-17	CC	TT	GG	CC	CC	CT	AA	GG	GG	AA	AG	GG	GG	GG
7._RUQ_33	_	TT	GG	CC	CC	CT	AA	_	GG	AA	AG	GG	GG	GG
8._PA70[PER]	_	_	_	GG	CC	_	AA	_	GG	AA	AG	_	_	_
9._GC-04-53-3-17	GG	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG
10._RUQ_33	GG	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG
11._MITC-000025	GG	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG
12._MITC-000026	GG	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	AG	AA	GG	GG	GG	AG	AC	GG	GG	AA	AG	_	CC	AG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC
1._PA_70_[PER]	_	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_
2._PA_70_[PER]	_	_	AA	CT	_	_	_	_	_	AA	GG	_	_	_
3._PA_70_[PER]	_	_	AG	CT	_	_	_	_	_	AA	GG	_	_	_
4._RUQ_33	_	_	AA	CT	_	_	_	_	_	AA	GG	_	_	_
5._RUQ_33	_	_	AA	_	_	_	_	_	_	AA	GG	_	_	AA
6._GC-04-053-3-17	CC	CC	AG	CT	CC	AG	AA	AC	AG	AA	GG	CC	AA	AA
7._RUQ_33	_	_	_	_	_	_	_	_	_	AA	GG	_	_	AA
8._PA70[PER]	_	CC	_	_	_	_	_	_	_	_	CC	_	_	_
9._GC-04-53-3-17	_	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA
10._RUQ_33	_	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA
11._MITC-000025	_	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA
12._MITC-000026	_	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA
13._PA_70_[PER]_Fld#_185_Plt#_1	_	_	_	GG	AC	AG	AC	AC	_	AA	CG	GG	AA	AA

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_Input profile	TT	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X
1._PA_70_[PER]	TT	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X
2._PA_70_[PER]	TT	CC	_	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X
3._PA_70_[PER]	TT	CC	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X
4._RUQ_33	TT	CC	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X
5._RUQ_33	_	_	CC	_	_	CT	_	TT	_	_	_	X_X	X_X	X_X
6._GC-04-053-3-17	TT	CC	CC	CT	AA	CT	CC	TT	TT	AT	GG	X_X	X_X	X_X
7._RUQ_33	TT	_	_	_	AA	CC	CC	TT	_	_	_	X_X	X_X	X_X
8._PA70[PER]	_	CC	_	_	_	_	_	_	_	_	_	X_X	X_X	X_X
9._GC-04-53-3-17	AA	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X
10._RUQ_33	AA	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X
11._MITC-000025	AA	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X
12._MITC-000026	AA	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	GG	_	AG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X

Input profile: PA_70_[PER] GC-04-053-3-17

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

1._PA_70_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_70_[PER]

67.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

3._PA_70_[PER]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._PA_70_[PER] RUQ_33

65 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._PA_70_[PER] RUQ_33

61.9 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._PA_70_[PER] GC-04-053-3-17

60.1 %
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

7._PA_70_[PER] RUQ_33

57 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._PA_70_[PER] PA70[PER]

48.1 %
26 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

9._PA_70_[PER] GC-04-53-3-17

35.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

10._PA_70_[PER] RUQ_33

35.8 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

11._PA_70_[PER] MITC-000025

35.8 %
81 shared markers

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USDA-SHRS, United States of America

12._PA_70_[PER] MITC-000026

35.8 %
81 shared markers

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USDA-SHRS, United States of America

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

30.6 %
80 shared markers

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240